Function for generating an example matchRanges dataset

This function will generate an example dataset as input for matchRanges().

makeExampleMatchedDataSet(type = "GRanges")

Arguments

type	Character designating which type of dataset to make. options are one of 'data.frame', 'data.table', 'DataFrame', 'GRanges', or 'GInteractions'.

Value

Returns an example dataset for input to matchRanges().

Examples

## Make examples for matchRanges()
makeExampleMatchedDataSet()
#> GRanges object with 136 ranges and 3 metadata columns:
#>         seqnames    ranges strand |  feature1       color    length
#>            <Rle> <IRanges>  <Rle> | <logical> <character> <integer>
#>     [1]     chr1    92-200      * |      TRUE     #4fbe9b       109
#>     [2]     chr1    71-178      * |      TRUE     #d098d7       108
#>     [3]     chr1   747-902      * |      TRUE     #e19995       156
#>     [4]     chr1   362-502      * |      TRUE     #d098d7       141
#>     [5]     chr1   339-406      * |      TRUE     #d098d7        68
#>     ...      ...       ...    ... .       ...         ...       ...
#>   [132]     chr1   511-606      * |     FALSE     #d098d7        96
#>   [133]     chr1   724-847      * |     FALSE     #4fbe9b       124
#>   [134]     chr1    72-172      * |     FALSE     #4fbe9b       101
#>   [135]     chr1   341-480      * |     FALSE     #4fbe9b       140
#>   [136]     chr1   674-734      * |     FALSE     #d098d7        61
#>   -------
#>   seqinfo: 1 sequence from an unspecified genome; no seqlengths
makeExampleMatchedDataSet(type = 'data.frame') |> head()
#>     color      size   set
#> 1 #4fbe9b 0.3585868 focal
#> 2 #e19995 0.6616224 focal
#> 3 #d098d7 1.1700379 focal
#> 4 #e19995 0.6117738 focal
#> 5 #d098d7 1.2555948 focal
#> 6 #d098d7 1.5000355 focal
makeExampleMatchedDataSet(type = 'data.table')
#>        color      size   set
#>   1: #4fbe9b 0.3585868 focal
#>   2: #e19995 0.6616224 focal
#>   3: #d098d7 1.1700379 focal
#>   4: #e19995 0.6117738 focal
#>   5: #d098d7 1.2555948 focal
#>  ---                        
#> 132: #d098d7 0.7736067  pool
#> 133: #4fbe9b 1.1424195  pool
#> 134: #6eb3d9 0.9260968  pool
#> 135: #6eb3d9 0.8206254  pool
#> 136: #e19995 0.8349786  pool
makeExampleMatchedDataSet(type = 'DataFrame')
#> DataFrame with 136 rows and 3 columns
#>        color      size         set
#>     <factor> <numeric> <character>
#> 1    #4fbe9b  0.358587       focal
#> 2    #e19995  0.661622       focal
#> 3    #d098d7  1.170038       focal
#> 4    #e19995  0.611774       focal
#> 5    #d098d7  1.255595       focal
#> ...      ...       ...         ...
#> 132  #d098d7  0.773607        pool
#> 133  #4fbe9b  1.142420        pool
#> 134  #6eb3d9  0.926097        pool
#> 135  #6eb3d9  0.820625        pool
#> 136  #e19995  0.834979        pool
makeExampleMatchedDataSet(type = 'GRanges')
#> GRanges object with 136 ranges and 3 metadata columns:
#>         seqnames    ranges strand |  feature1       color    length
#>            <Rle> <IRanges>  <Rle> | <logical> <character> <integer>
#>     [1]     chr1    92-200      * |      TRUE     #4fbe9b       109
#>     [2]     chr1    71-178      * |      TRUE     #d098d7       108
#>     [3]     chr1   747-902      * |      TRUE     #e19995       156
#>     [4]     chr1   362-502      * |      TRUE     #d098d7       141
#>     [5]     chr1   339-406      * |      TRUE     #d098d7        68
#>     ...      ...       ...    ... .       ...         ...       ...
#>   [132]     chr1   511-606      * |     FALSE     #d098d7        96
#>   [133]     chr1   724-847      * |     FALSE     #4fbe9b       124
#>   [134]     chr1    72-172      * |     FALSE     #4fbe9b       101
#>   [135]     chr1   341-480      * |     FALSE     #4fbe9b       140
#>   [136]     chr1   674-734      * |     FALSE     #d098d7        61
#>   -------
#>   seqinfo: 1 sequence from an unspecified genome; no seqlengths