annotates loops in a Hi-C plot

annotates loops in a Hi-C plot

bb_annoLoops(
  hic,
  loops,
  params = NULL,
  half = "inherit",
  shift = 4,
  type = "box",
  ...
)

Arguments

hic	hic plot to annotate
loops	bedpe file or dataframe in bedpe file format with loop positions
params	an optional "bb_params" object space containing relevant function parameters
half	which half of hic plots to annotate; default is "inherit", which will inherit whatever is plotted; other options are "both", "top", or "bottom"
shift	number of pixels on either end of loop in box/circle; number of pixels for length of arrow
type	type of annotation; options are "box", "circle", or "arrow"