Calculates all potential paired interactions from a BED file

Calculates all potential paired interactions from a BED file

bb_calcBedpe(
  bed,
  res = 10000,
  x = 100,
  decreasing = TRUE,
  interactions = "interchromosomal"
)

Arguments

bed

data.frame in narrowpeak format
res

bin resolution for output BEDPE
x

integer top x numer of strongest or weakest peaks
decreasing

logical order by decreasing
interactions

string filter for interchromosomal or intrachromosomal interactions

Value

Returns a data.table of BEDPE interactions