Plots genomic coordinates for the axis of a BentoBox plot

bb_plotGenomeLabel(
  x,
  y,
  plot = NULL,
  width = NULL,
  chrom = NULL,
  chromstart = NULL,
  chromend = NULL,
  params = NULL,
  just = c("left", "top"),
  scale = "bp",
  assembly = "hg19",
  fontsize = 10,
  fontcolor = "black",
  linecolor = "black",
  commas = TRUE,
  sequence = TRUE,
  boxWidth = 0.5,
  ticks = NULL,
  tcl = 0.5,
  default.units = "inches",
  ...
)

Arguments

x	A numeric or unit object specifying x-location.
y	A numeric or unit object specifying y-location.
plot	BentoBox plot to add genome label
width	if not specifying plot, width of genome label, as a numeric or unit object
chrom	if not specifying plot, chromosome of genome label
chromstart	if not specifying plot, chromstart of genome label
chromend	if not specifying plot, chromend of genome label
params	an optional "bb_params" object space containing relevant function parameters
just	The justification of the label relative to its (x, y) location.If there are two values, the first specifies horizontal justification and the second value specifies vertical justification. Possible string values are: "left", "right", "centre", "center", "bottom", and "top".
scale	scale of the genome of the label. Options are "bp", "Kb", or "Mb"
assembly	default genome assembly as a string or a bb_assembly object (will be inherited from plot object if provided)
fontsize	Fontsize for labels (in points).
fontcolor	Color for all text and lines (with the exception of sequence information).
linecolor	Axis linecolor.
commas	A logical value indicating whether to include commas in start and stop labels.
sequence	A logical value indicating whether to include sequence information above the label axis (only at appropriate resolutions).
ticks	A numeric vector of x-value locations for tick marks.
tcl	Length of tickmark as fraction of text height.
default.units	A string indicating the default units to use if x or y are only given as numerics.
lwd	Axis linewidth.
fontfamily	Text fontfamily.