plots and highlights a chromosome with its cytobands

plots and highlights a chromosome with its cytobands

bb_plotIdeogram(
  chrom,
  params = NULL,
  assembly = "hg19",
  orientation = "h",
  start = NULL,
  end = NULL,
  highlightCol = "red",
  x = NULL,
  y = NULL,
  width = NULL,
  height = NULL,
  just = c("left", "top"),
  default.units = "inches",
  draw = TRUE,
  ...
)

Arguments

chrom	chromsome to plot
params	an optional "bb_params" object space containing relevant function parameters
assembly	default genome assembly as a string or a bb_assembly object
orientation	"v" (vertical) or "h" (horizontal) orientation
start	highlight start
end	highlight end
highlightCol	fillcolor and linecolor for highlight box
x	A numeric or unit object specifying x-location
y	A numeric or unit object specifying y-location
width	A numeric or unit object specifying width
height	A numeric or unit object specifying height
just	A string or numeric vector specifying the justification of the viewport relative to its (x, y) location: "left", "right", "centre", "center", "bottom", "top"
default.units	A string indicating the default units to use if x, y, width, or height are only given as numerics
draw	A logical value indicating whether graphics output should be produced

Value

Function will return a bb_karyogram object