plots signal track data

plots signal track data

bb_plotSignal(
  signal,
  chrom,
  params = NULL,
  chromstart = NULL,
  chromend = NULL,
  range = NULL,
  linecolor = "grey",
  binSize = NA,
  binCap = TRUE,
  fillcolor = NULL,
  assembly = "hg19",
  ymax = 1,
  scale = FALSE,
  width = NULL,
  height = NULL,
  x = NULL,
  y = NULL,
  just = c("left", "top"),
  default.units = "inches",
  draw = TRUE,
  ...
)

Arguments

signal	signal track data to be plotted (bigwig file, bed format dataframe, or GRanges with "counts" metadata); can be one or a list of two
chrom	chromosome of region to be plotted as a string (i.e. "chr3")
params	an optional "bb_params" object space containing relevant function parameters
chromstart	start position
chromend	end position
range	y-range to plot (c(min, max))
linecolor	color(s) of line outlining signal track(s); if using fillcolor and no outline is desired, set to NA
binSize	the length of each bin in bp
binCap	TRUE/FALSE whether the function will limit the number of bins to 8,000
fillcolor	color(s) filling in signal track(s)
assembly	desired genome assembly
ymax	fraction of max y-value to set as height of plot
scale	A logical value indicating whether to include a data scale label in the top left corner
width	A numeric or unit object specifying width
height	A numeric or unit object specifying height
x	A numeric or unit object specifying x-location
y	A numeric or unit object specifying y-location
just	a string or numeric vector specifying the justification of the viewport relative to its (x, y) location: "left", "right", "centre", "center", "bottom", "top"
default.units	A string indicating the default units to use if x, y, width, or height are only given as numerics
draw	A logical value indicating whether graphics output should be produced