Function for reading available normalizations from .cool or .mcool file

Function for reading available normalizations from .cool or .mcool file

Usage

readCoolNormTypes(fname, resolution)

Arguments

fname

path to .cool or .mcool file

resolution

optional, specify which resolution(s) to read normalization types from. Default is all resolutions in `fname`

Value

Vector of available normalizations

Details

The "BALANCE" normalization refers to applying the pre-calculated matrix balancing weights in the `weight` dataset of `fname`, typically present in files created using cooler. VC is vanilla coverage, VC_SQRT is square root of vanilla coverage, and KR is Knight-Ruiz normalization.