InteractionArray Class — InteractionArray-class • mariner

The `InteractionArray` class extends `InteractionSet` to provide an interface for accessing submatrices pulled from Hi-C data.

Usage

InteractionArray(assays, interactions, ...)

# S4 method for ANY,GInteractions
InteractionArray(assays, interactions, ...)

# S4 method for missing,missing
InteractionArray(assays, interactions, ...)

# S4 method for InteractionArray
show(object)

# S4 method for InteractionArray
rbind(..., deparse.level = 1)

# S4 method for InteractionArray
cbind(..., deparse.level = 1)

Arguments

assays, interactions: See ?InteractionSet
...: InteractionArray objects to be combined column-wise. All objects must be the same class.
object: InteractionArray object.
deparse.level: An integer scalar; see `?base::cbind` for a description of this argument.

Value

An InteractionArray (see description)

Details

This class is constructed with the `pullHicMatrices()` function when all paired ranges have equal dimensions.

See also

[InteractionSet::InteractionSet]

Examples

InteractionArray()
#> class: InteractionArray 
#> dim: 0 interaction(s), 0 file(s), 0x0 count matrix(es)
#> metadata(0):
#> assays(0):
#> rownames: NULL
#> rowData names(0):
#> colnames: NULL
#> colData names(0):
#> type: GInteractions
#> regions: 0