Define function to flexibly bin bedpe data by hic resolution

Define function to flexibly bin bedpe data by hic resolution

binBedpe(bedpe, res, a1Pos, a2Pos)

Arguments

bedpe

GInteractions or data.table object with paired interactions

res

Integer - resolution in which to bin bedpe anchors

a1Pos, a2Pos

Position within anchors to resize the bin. Can be a character or integer vector of length 1 or length(bedpe) designating the position for each element in bedpe. Character options are "start", "end" and "center". Integers are referenced from the start position for '+' and '*' strands and from the end position for the '-' strand.

Value

GInteractions objected binned to res by a1Pos and a2Pos.